Jim Giovannoni

Jim Giovannoni

Scientist

Office/Lab: Room 429/426

Contact: jjg33@cornell.edu / 607-255-1414

Affiliations:

Plant Molecular Biologist at the USDA-ARS Plant, Soil and Nutrition Laboratory

Adjunct Professor in Cornell University’s Department of Horticulture
and Department of Plant Breeding and Genetics

Adjunct Assistant Professor in Department of Plant Biology

Graduate Field: Horticulture, Plant Biology

Research Summary

The focus of research in the Giovannoni laboratory is molecular and genetic analysis of fruit ripening and related signal transduction systems with emphasis on the relationship of fruit ripening to nutritional quality. We are also involved in development of tools for genomics of the Solanaceae including participation in the International Tomato Sequencing Project. We employ several experimental systems but the majority of our work involves the use of tomato. The broad objectives of the lab include deciphering the underlying molecular basis of components of ripening regulation conserved through evolution and how these regulatory networks coordinate ripening events including those related to quality and nutritional content.

Experimental approaches include: 1) positional cloning of loci known via mutation to harbor genes necessary for normal fruit development and ripening, and 2) isolation of candidate ripening regulatory genes based on expression pattern or relationship to ripening-related signal transduction systems (e.g. ethylene, light), and functional analysis in transgenic plants.


Publications

  • Mueller, L. et al. 2009. A snapshot of the emerging tomato genome sequence. The Plant Genome 2: 78-92
  • Ponce-Valdez, M., Moore-Vellman, S., Giovannoni, J., Gan, S. and Watkins, B. 2009. Differential fruit gene expression in two strawberry cultivars in response to elevated CO2 during storage reveled by a heterologous fruit microarray approach. Post Harvest Biol. Technol 51: 131-140
  • Ioannidi, E., Kalamaki, M., Engineer, C., Pateraki, I., Alexandrou, D., Melidou, I., Giovannoni, J. and Kanellis, A. 2009. Expression profiling of ascorbic acid-related genes during tomato fruit development and ripening and in response to stress conditions. J. Ex. Botany 60: 663-668
  • Wang, S., J. Liu, Y. Feng, X. Niu, J. Giovannoni, Y. Liu. 2008. Altered Plastid Levels and Potential for Improved Fruit Nutrient Content Via Down-Regulation of the Tomato DDB1 Interacting Protein CUL4. Plant Journal 55: 89-103
  • Barry, C., R. McQuinn, M. Chung, A. Besuden, J. Giovannoni. 2008. Amino Acid Substitutions in Homologs of the STAY-GREEN (SGR) Protein are Responsible for the Green-Flesh and Chlorophyll Retainer Mutation of Tomato and Pepper. Plant Physiology 147: 179-187
  • Datema, E.E., L. Mueller, R. Buels, J. Giovannoni, R. Visser, W. Stiekema, R. VanHam. 2008. Comparative BAC End Sequence Analysis of Tomato and Potato Reveals Over-Representation of Specific Gene Families in Potato. BMC Plant Biology 8: 34
  • Wetcher, P., A. Levi, K. Harris, A. Davis, Z. Fei, N. Katzir, J. Giovannoni, A. Salman-Minkov, A. Hernandez, J. Thimmapuram, Y. Tadmor, V. Portnoy, T. Trebitsh. 2008. Gene Expression in Developing Watermelon Fruit. BMC Genomics 9: 275
  • Slocombe, S., Schauvinhold, I., McQuinn, R., Besser, K., Welsby, N., Harper, A., Azziz, N., Larson, T., Giovannoni, J., Dixon, R. and Broun, P. 2008. Genomic analysis of branched chain fatty acid and acyl sugar production in/ Solanum pennellii/ and/ Nicotiana benthamiana/. Plant Physiol 148: 1830-1846
  • Wang. Y., Diehl, A., Wu, F., Vrebalov, J., Giovannoni, J., Siepel, A., Tanksley, S. 2008. Sequencing and Comparative Analysis of a Conserved Syntenic Segment in the Solanaceae. Genetics 180: 391-408
  • Portnoy, V., Benyamini, Y., Bar, E., Harel-Beja, R., Gepstein, S., Giovannoni, J., Schaffer, A., Burger, J., Tadmor, Y., Lewinsholm, E., Katzir, N. 2008. The molecular and biochemical basis for varietal variation in sesquiterpene content in melon (/Cucumis melo/ L.) rinds. Plant Mol. Biol 66: 647-661
  • Akhtar, A., McQuinn, R., Naponelli, V., Gregory, J., Giovannoni, J. and Hanson, A. 2008. Tomato gamma-glutamyhydrolases: Expression, characterization and evidence for heterodimer foramation. Plant Physiology 148: 775-785
  • Giovannoni, J., . 2007. A New Plant Gene in the Pathway to Vitamin C. PNAS USA 104: 9109-9110
  • Kelleher, C., R. Chiu, H. Shin, I. Bosdet, M. Krzywinski, C. Fjell, J. Wilkin, T. Yin, S. DiFazio, J. Ali, J. Asano, S. Chan, A. Cloutier, N. Girn, S. Leach, J. Giovannoni, J. Grimwood, G. Tuskan, C. Douglas. 2007. A Physical Map of the Highly Heterozygous Populus Genome: Integration With the Genome Sequence and Genetic Map and Analysis of Haplotype Variation. The Plant Journal 50: 1063-1078
  • Barry, C., J. Giovannoni. 2007. Ethylene and Fruit Ripening. J. of Plant Growth Regulation 26: 143-159
  • Giovannoni, J., . 2007. Fruit Ripening Mutants Yield Insights Into Ripening Control. Current Opinion in Plant Biology 10: 283-289
  • Barry, C. S., J. J. Giovannoni. 2006. Ripening in the Tomato Green-ripe Mutant is Inhibited by Ectopic Expression of a Protein that Disrupts Ethylene Signaling. Proc Natl Acad USA 103(20): 7923-7928
  • Fei, Z., X. Tang, R. Alba, J. Giovannoni. 2006. Tomato Expression Database (TED): A Suite of Data Presentation and Analysis Tools. Nucleic Acids Research 34: D766
  • Barry, C., R. P. McQuinn, A. J. Thompson, G. B. Seymour, D. Grierson, J. J. Giovannoni. 2005. Ethylene Insensitivity Conferred by the Green-ripe (Gr) and Never-ripe 2 (Nr-2) Ripening Mutants of Tomato. Plant Physiology 138(1): 267-275
  • Giovannoni, J. J., S. El-Rakshy. 2005. Genetic Regulation of Tomato Fruit Ripening and Development and Implementation of Associated Genomics Tools. Acta Horticulturae 682: 63-72
  • Li, C., A. L. Schilmiller, G. Liu, G. I. Lee, S. Jayanty, C. Sageman, J. Vrebalov, J. J. Giovannoni, K. Yagi, Y. Kobayashi, G. A. Howe. 2005. Role of Beta-Oxidation in Jasmonate Biosynthesis and Systemic Wound Signaling in Tomato. Plant Cell 17(3): 971-986
  • Mueller, L. A., S. D. Tanksley, J. J. Giovannoni, J. Van Eck, S. Stack, D. Choi, B. D. Kim, M. Chen, Z. Cheng, C. Li, H. Ling, Y. Xue, G. Seymour, G. Bishop, G. Bryan, R. Sharma, J. Khurana, A. Tyagi, D. Chattopadhyay, N. K. Singh, W. Stiekema, P. Lindhout, T. Jesse, R. K. Lankhorst, M. Bouzayen, D. Shibata, S. Tabata, A. Granell, M. A. Botella, G. Giuliano, L. Frusciante, M. Causse, D. Zamir. 2005. The Tomato Sequencing Project, the First Cornerstone of the International Solanaceae Project (SOL). Comparative and Functional Genomics 6: 153-158
  • Alba, R., P. Payton, Z. Fei, R. McQuinn, P. Debbie, G. B. Martin, S. D. Tanksley, J. J. Giovannoni. 2005. Transcriptome and Selected Metabolite Analysis Reveal Multiple Points of Ethylene Control During Tomato Fruit Development. Plant Cell 17(11): 2954-2965
  • Moore, S., P. Payton, M. Wright, S. Tanksley, J. Giovannoni. 2005. Utilization of Tomato Microarrays for Comparative Gene Expression Analysis in the Solanaceae. Journal of Experimental Botany 56(421): 2885-2895
  • Adams-Phillips, L., C. Barry, P. Kannan, J. Leclercq, M. Bouzayen, J. Giovannoni. 2004. Evidence that CTR1-mediated Ethylene Signal Transduction in Tomato is Encoded by a Multigene Family Whose Members Display Distinct Regulatory Features. Plant Molecular Biology 54: 387-404
  • Basset, G. J. C., E. P. Quinlivan, S. Ravanel, F. Rébeillé, B. P. Nichols, K. Shinozaki, M. Seki, L. C. Adams-Phillips, J. J. Giovannoni, J. F. Gregory III, A. D. Hanson. 2004. Folate synthesis in plants: The p-aminobenzoate branch is initiated by a bifunctional PabA-PabB protein that is targeted to plastids. Proceedings of the National Academy of Sciences, USA 101: 1496-1501
  • Giovannoni, J., . 2004. Genetic Regulation of Fruit Development and Ripening. The Plant Cell 16: S170 -180
  • Liu, Y., S. Roof, Z. Ye, C. Barry, A. van Tuinen, J. Vrebalov, C. Bowler, J. Giovannoni. 2004. Manipulation of Light Signal Transduction as a Means of Modifying Fruit Nutritional Quality in Tomato. Proceedings of the National Academy of Sciences, USA 101(26): 9897-9902
  • Adams-Phillips, L., C. Barry, J. Giovannoni. 2004. Signal transduction systems regulating fruit ripening. Trends in Plant Science 9: 331-338
  • Vrebalov, J., D. Ruezinsky, V. Padmanabhan, R. White, D. Medrano, R. Drake, W. Schuch, J. Giovannoni. 2002. A MADS-box gene necessary for fruit ripening at the tomato ripening-inhibitor (rin) locus. Science 296: 343-346
  • Wilkinson, J., M. Lanahan, H. Yen, J. Giovannoni, H. Klee. 1995. An Ethylene-inducible Component of Signal Transduction Encoded by Never-ripe. Science 270(5243): 1807-1809

Lab Members

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Lab Member
Betsy Ampopho
Lab Member
Catherine Martel
Lab Member
Je Min Lee
Lab Member
Julia Vrebalov
Lab Member
Cuong Nyguen
Lab Member
Nigel Gapper
Lab Member
Elizabeth Fox
Lab Member
Ruth White
Lab Member
Ryan McQuinn
Lab Member
Silin Zhong