Mueller, L. et al. 2009. A snapshot of the emerging tomato genome sequence. The Plant Genome 2: 78-92
Ponce-Valdez, M., Moore-Vellman, S., Giovannoni, J., Gan, S. and Watkins, B. 2009. Differential fruit gene expression in two strawberry cultivars in response to elevated CO2 during storage reveled by a heterologous fruit microarray approach. Post Harvest Biol. Technol 51: 131-140
Ioannidi, E., Kalamaki, M., Engineer, C., Pateraki, I., Alexandrou, D., Melidou, I., Giovannoni, J. and Kanellis, A. 2009. Expression profiling of ascorbic acid-related genes during tomato fruit development and ripening and in response to stress conditions. J. Ex. Botany 60: 663-668
Wang, S., J. Liu, Y. Feng, X. Niu, J. Giovannoni, Y. Liu. 2008. Altered Plastid Levels and Potential for Improved Fruit Nutrient Content Via Down-Regulation of the Tomato DDB1 Interacting Protein CUL4. Plant Journal 55: 89-103
Barry, C., R. McQuinn, M. Chung, A. Besuden, J. Giovannoni. 2008. Amino Acid Substitutions in Homologs of the STAY-GREEN (SGR) Protein are Responsible for the Green-Flesh and Chlorophyll Retainer Mutation of Tomato and Pepper. Plant Physiology 147: 179-187
Datema, E.E., L. Mueller, R. Buels, J. Giovannoni, R. Visser, W. Stiekema, R. VanHam. 2008. Comparative BAC End Sequence Analysis of Tomato and Potato Reveals Over-Representation of Specific Gene Families in Potato. BMC Plant Biology 8: 34
Wetcher, P., A. Levi, K. Harris, A. Davis, Z. Fei, N. Katzir, J. Giovannoni, A. Salman-Minkov, A. Hernandez, J. Thimmapuram, Y. Tadmor, V. Portnoy, T. Trebitsh. 2008. Gene Expression in Developing Watermelon Fruit. BMC Genomics 9: 275
Slocombe, S., Schauvinhold, I., McQuinn, R., Besser, K., Welsby, N., Harper, A., Azziz, N., Larson, T., Giovannoni, J., Dixon, R. and Broun, P. 2008. Genomic analysis of branched chain fatty acid and acyl sugar production in/ Solanum pennellii/ and/ Nicotiana benthamiana/. Plant Physiol 148: 1830-1846
Wang. Y., Diehl, A., Wu, F., Vrebalov, J., Giovannoni, J., Siepel, A., Tanksley, S. 2008. Sequencing and Comparative Analysis of a Conserved Syntenic Segment in the Solanaceae. Genetics 180: 391-408
Portnoy, V., Benyamini, Y., Bar, E., Harel-Beja, R., Gepstein, S., Giovannoni, J., Schaffer, A., Burger, J., Tadmor, Y., Lewinsholm, E., Katzir, N. 2008. The molecular and biochemical basis for varietal variation in sesquiterpene content in melon (/Cucumis melo/ L.) rinds. Plant Mol. Biol 66: 647-661
Portnoy, V., Y. Benyamini, E. Bar, R. Harel-Beja, S. Gepstein, J. Giovannoni, A. Schaffer, J. Burger, Y. Tadmor, E. Lewinsholm, N. Katzir. 2008. The Molecular and Biochemical Basis for Varietal Variation in Sesquiterpene Content in Melon (Cucumis melo L.) Rinds. Plant Mol. Biology 66: 647-661
Cara, B., J. Giovannoni. 2008. The Molecular Biology of Ethylene During Tomato Fruit Development and Maturation. Plant Science 175: 106-113
Akhtar, A., McQuinn, R., Naponelli, V., Gregory, J., Giovannoni, J. and Hanson, A. 2008. Tomato gamma-glutamyhydrolases: Expression, characterization and evidence for heterodimer foramation. Plant Physiology 148: 775-785
Giovannoni, J., . 2007. A New Plant Gene in the Pathway to Vitamin C. PNAS USA 104: 9109-9110
Kelleher, C., R. Chiu, H. Shin, I. Bosdet, M. Krzywinski, C. Fjell, J. Wilkin, T. Yin, S. DiFazio, J. Ali, J. Asano, S. Chan, A. Cloutier, N. Girn, S. Leach, J. Giovannoni, J. Grimwood, G. Tuskan, C. Douglas. 2007. A Physical Map of the Highly Heterozygous Populus Genome: Integration With the Genome Sequence and Genetic Map and Analysis of Haplotype Variation. The Plant Journal 50: 1063-1078
Barry, C., J. Giovannoni. 2007. Ethylene and Fruit Ripening. J. of Plant Growth Regulation 26: 143-159
Giovannoni, J., . 2007. Fruit Ripening Mutants Yield Insights Into Ripening Control. Current Opinion in Plant Biology 10: 283-289
Fox, E., J. Giovannoni. 2007. Genetic control of fruit ripening. In: M.K. Razdan, A. Mattoo (eds.) Genetic Improvement of Solanaceous Crops, Vol. 1: Tomato. Science Publishers, Enfield. : 343-378
Giovannoni, J. J., S. El-Rakshy. 2005. Genetic Regulation of Tomato Fruit Ripening and Development and Implementation of Associated Genomics Tools. Acta Horticulturae 682: 63-72
Mueller, L. A., S. D. Tanksley, J. J. Giovannoni, J. Van Eck, S. Stack, D. Choi, B. D. Kim, M. Chen, Z. Cheng, C. Li, H. Ling, Y. Xue, G. Seymour, G. Bishop, G. Bryan, R. Sharma, J. Khurana, A. Tyagi, D. Chattopadhyay, N. K. Singh, W. Stiekema, P. Lindhout, T. Jesse, R. K. Lankhorst, M. Bouzayen, D. Shibata, S. Tabata, A. Granell, M. A. Botella, G. Giuliano, L. Frusciante, M. Causse, D. Zamir. 2005. The Tomato Sequencing Project, the First Cornerstone of the International Solanaceae Project (SOL). Comparative and Functional Genomics 6: 153-158
Liu, Y., J. Giovannoni. 2003. Light signal transduction genes and regulation of pigmentation in tomato. Plant Genetics 2003: Mechanisms of Genetic Variation : Abst 96
Vrebalov, J., D. Ruezinsky, V. Padmanabhan, R. White, D. Medrano, R. Drake, W. Schuch, J. Giovannoni. 2002. A MADS-box gene necessary for fruit ripening at the tomato ripening-inhibitor (rin) locus. Science 296: 343-346
Van der Hoeven, R., C. Ronning, J. Giovannoni, G. B. Martin, S. Tanksley. 2002. Deductions about the number, organization and evolution of genes in the tomato genome based on analysis of a large EST collection and selective genomic sequencing. Plant Cell 14: 1441-1456
Moore, S., P. Payton, J. Giovannoni. 2002. DNA microarrays for gene expression analysis. In: Practical Approach: Molecular Plant Biology Vol. 2. (P. Gilmartin and C. Bowler, Eds) Oxford University Press. : 65-76
Giovannoni, J., P. Payton, S. Moore, R. White, J. Vrebalov. 2002. Genetic control of fruit quality and prospects for nutrient modification. HortScience 37: 453-456
Leclercq, J., L. Adams-Phillips, H. Zegzouti, B. Jones, A. Latche, J. Giovannoni, J. Peche, M. Bouzayen. 2002. LECTR1, a tomato CTR1-like gene, demonstrates ethylene signaling ability in Arabidopsis and novel expression patterns in tomato. Plant Physiology 130: 1132-1142
Moore, S., J. Vrebalov, P. Payton, J. Giovannoni. 2002. Use of genomics tools to isolate key ripening genes and analyze fruit maturation in tomato. Journal of Experimental Botany 53: 2023-2030
McCaskill, A. R., J. Giovannoni. 2002. Use of molecular markers for fruit crop improvement. In: Molecular Techniques in Crop Improvement (S. Mohan Jain, D. S. Brar and B. S. Ahloowalia eds.) Kluwer Academic Publishers, The Netherlands : 283-297
Barry, C., E. Fox, H. Yen, S. Lee, T. Ying, D. Grierson, J. Giovannoni. 2001. Analysis of the ethylene response in the epinsastic (epi) mutant of tomato. Plant Physiology 127: 58-66
Giovannoni, J., . 2001. Molecular Regulation of Fruit Ripening. Annual Review of Plant Physiology and Plant Molecular Biology 52: 725-749
Casselman, A., J. Vrebalov, J. Conner, A. Singhal, J. Giovannoni, M. Nasrallah, J. Nasrallah. 2000. Recombinational Analysis of the Brassica S locus. The Plant Cell 12: 23-33
Giovannoni, J., H. Yen, B. Shelton, S. Miller, P. Kannan, J. Vrebalov, D. Tieman, R. Hackett, D. Grierson, H. Klee. 1999. Genetic Mapping of Ripening and Ethylene-Related Loci in Tomato. Theoretical and Applied Genetics 98: 1005-1013
Giovannoni, J., H. Yen, B. Shelton, S. Miller, P. Kannan, J. Vrebalov, D. Tieman, R. Hackett, D. Grierson, H. Klee. 1999. Genetic Mapping of Ripening and Ethylene-Related Loci in Tomato. Theoretical and Applied Genetics 98: 1005-1013
Alcala, J., L. Pike, J. Giovannoni. 1999. Marker-Assisted Selection for Cytoplasmic Male Sterility in Onion and Identification of Plastome Variants Useful for Cultivar Identificaiton and Pedigree Analysis. J. Amer. Soc. Hort. Sci. 124: 122-127
Thompson, A., C. Barry, M. Jarvis, J. Vrebalov, J. Giovannoni, D. Grierson, G. Seymour. 1999. Molecular and Genetic Characterization of a Novel Pleiotropic Tomato-Ripening Mutant. Plant Physiology 120: 383-389
Thompson, A., C. Barry, M. Jarvis, J. Vrebalov, J. Giovannoni, D. Grierson, G. Seymour. 1999. Molecular and Genetic Characterization of a Novel Pleiotropic Tomato-Ripening Mutant. Plant Physiology 120: 383-389
Lashbrook, C., J. Giovannoni, B. Hall, R. Fischer, A. Bennett. 1998. Transgenic Analysis of Tomato Endo-Beta-1,4-Glucanase Gene Function. Role of CEL1 in Floral Abscission. The Plant Journal 13: 303-310
Alcala, J., J. Giovannoni, L. Pike, S. Reddy. 1997. Application of Genetic Bit Analysis for Allelic Selection in Plant Breeding. Molecular Breeding 3: 495-502
Yen, H., A. Shelton, L. Howard, J. Vrebalov, J. Giovannoni. 1997. The Tomato High Pigment (hp) Locus Maps to Chromosome 2 and Influences Plastome Copy Number and Fruit Quality. Theoretical and Applied Genetics 95: 1069-1079
Pillen, K., K. Alpert, J. Giovannoni, M. Ganal, S. Tanksley. 1996. Rapid and Reliable Screening of a Tomato YAC Library Exclusively Based on PCR. Plant Molecular Biology Reporter 141(1): 58-67
Oh, B.J., D. Balint, J. Giovannoni. 1995. A Modified Procedure for PCR-Based Differential Display and Demonstration of Use in Plants for Isolation of Fruit Ripening-Related Genes. Plant Molecular Biology Reporter 13(1): 70-81
Giovannoni, J. J., E. N. Noensie, D. M. Ruezinsky, X. Lu, S. L. Tracy, M. W. Ganal, G. B. Martin, K. Pillen, K. Alpert, S. D. Tanksley. 1995. Molecular genetic analysis of the ripening-inhibitor and non-ripening loci of tomato: a first step in genetic map-based cloning of fruit ripening genes. Molecular and General Genetics 248: 195-206
Lu, X, D. Ruezinsky, J. Giovannoni. 1995. Rapid Isolation of Terminal Sequences From Cloned Plant DNA Fragments. Plant Molecular Biology Reporter 13(4): 369-376
Yen, H., S. Lee, S. Tanksley, M. Lanahan, H. Klee, J. Giovannoni. 1995. The Tomato Never-Ripe Locus Regulates Ethylene-Inducible Gene Expression and is Linked to a Homologue of the Arabidospis ETRI Gene. Plant Physiology 107: 1343-1353
Lanahan, M., H. Yen, J. Giovannoni, H. Klee. 1994. The Never-Ripe Mutation Blocks Ethylene Perception in Tomato. The Plant Cell 6: 521-530
Gray, J., S. Picton, J. Giovannoni, D. Grierson. 1994. The Use of Transgenic and Naturally Occurring Mutants to Understand and Manipulate Tomato Fruit Ripening. Plant, Cell and Environment 17(5): 557-571
Churchill, G., J. Giovannoni, S. Tanksley. 1993. Pooled-Sampling Makes High-Resolution Mapping Practical With DNA Markers. PNAS USA 90: 16-20
Tanksley, S., M. Ganal, J. Prince, C. deVincente, M. Bonierbale, P. Broun, T. Fulton, J. Giovannoni, S. Grandillo, G. Martin, R. Messeguer, J. Miller, L. Miller, A. Paterson, O. Pineda, M. Roder, R. Wing, W. Wu, N. Young. 1992. High Density Molecular Maps of the Tomato and Potato Genomes. Genetics 132: 1141-1160
Penarrubia, L., R. Kim, J. Giovannoni, S. Kim, R. Fischer. 1992. Production of the Sweet Protein Monellin in Transgenic Plants. Bio/Technology 10: 561-563
Giovannoni, J., R. Wing, M. Ganal, S. Tanksley. 1991. Isolation of Molecular Markers From Specific Genomic Regions Through the Use of Isogenic DNA Pools and Existing Mapping Populations. Nuc. Acids Res. 19: 6553-6558
DellaPenna, D., C. Lashbrook, K. Toenjes, J. Giovannoni, R. Fischer, A. Bennett. 1990. Polygalacturonase Isozymes and Pectin Depolymerization in Transgenic Rin Tomato Fruit. Plant Physiol 94: 1882-1886
Giovannoni, J., D. DellaPenna, A. Bennett, R. Fischer. 1989. Expression of a Chimeric Polygalacturonase Gene in Transgenic Rin (Ripening Inhibitor) Tomato Fruit Reslts in Polyuronide Degradation But Not Fruit Softening. The Plant Cell 1: 53-63
Margossian, L., A. Federman, J. Giovannoni, R. Fischer. 1988. Ethylene-Regulated Expression of a Tomato Fruit Ripening Gene Encoding a Porteinase Inhibitor 1 With a Glutamic Residue at the Reactive Site. PNAS USA 85: 8012-8016
Giovannoni, J., . 0. Fruit ripening and its manipulation. In: S. Gan (ed.) Senescence Processes of Plants. Blackwell Publishing, Oxford. : 278-295